Hi all,
I've searched the lists extensively and have not been able to resolve my
problem. I'd greatly appreciated any help.
I have run the recon-all pipeline on a number of subjects, made the
appropriate fixes and am happy with the surfaces. For each subject, I have
a number of ROIs that are creat
I think mri_label2label with the sphere from the left right registration should
work
Bruce
> On Oct 11, 2017, at 5:43 PM, Neuro Lists
> wrote:
>
> Hi all,
> I've searched the lists extensively and have not been able to resolve my
> problem. I'd greatly appreciated any help.
>
> I have run th
Try
mris_apply_reg --src-label your.lh.label --trg your.rh.label -streg
lh.sphere.left_right rh.sphere
On 10/11/17 5:43 PM, Neuro Lists wrote:
Hi all,
I've searched the lists extensively and have not been able to resolve
my problem. I'd greatly appreciated any help.
I have run the recon-a
Hi Doug and Bruce,
I forgot to mention that I had tried that as well but without success. As a
sanity check, tried flipping a label from the 'bert' subject and it still
comes out wrong. I've uploaded a screen shot of the result:
https://imgur.com/a/J6Phx
Thank you for any input you might have!
T
Hi all,
I was just wondering if there was any further insight into what I might be
doing wrong on this.
Thanks again!
On Thu, Oct 12, 2017 at 10:30 AM, Neuro Lists wrote:
> Hi Doug and Bruce,
> I forgot to mention that I had tried that as well but without success. As
> a sanity check, tried f
Sorry, try this
mris_apply_reg --src-label lh.BA45.label --trg lh_flip.BA45.label
--streg ../surf/lh.sphere.left_right ../surf/rh.sphere.left_right
On 10/13/17 2:58 PM, Neuro Lists wrote:
Hi all,
I was just wondering if there was any further insight into what I
might be doing wrong on this.
Hi Doug,
Thanks a lot for looking into it. Unfortunately it's still not working
though.
See here:
https://imgur.com/a/lxXUH
Thanks again!
On Mon, Oct 16, 2017 at 12:31 PM, Douglas Greve
wrote:
> Sorry, try this
>
> mris_apply_reg --src-label lh.BA45.label --trg lh_flip.BA45.label --streg
> ../
Is this fsaverage or one of your own subjects?
On 10/17/2017 02:18 PM, Neuro Lists wrote:
> Hi Doug,
> Thanks a lot for looking into it. Unfortunately it's still not working
> though.
>
> See here:
> https://imgur.com/a/lxXUH
>
> Thanks again!
>
> On Mon, Oct 16, 2017 at 12:31 PM, Douglas Greve
Hi,
The one I tested with in the last couple of messages is just the standard
bert subject after having done:
cd ${SUBJECTS_DIR}/bert
cd surf
mris_left_right_register lh.sphere rh.sphere lh.sphere.left_right
rh.sphere.left_right
And then running:
cd ../label
mris_apply_reg --src-label lh.BA45.la
Hi again,
I just wanted to revisit this thread to see if I had misunderstood
something or had done something incorrectly?
The commands I used for bert were as follows:
cd ${SUBJECTS_DIR}/bert
cd surf
mris_left_right_register lh.sphere rh.sphere lh.sphere.left_right
rh.sphere.left_right
cd ../label
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