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-Original Message-
From: Douglas N Greve [mailto:gr...@nmr.mgh.harvard.edu]
Sent: Monday, July 18, 2011 3:11 PM
To: John Richey
Cc: 'Bruce Fischl'; 'freesurfer@nmr.mgh.harvard.edu'
Subject: Re: [Freesurfer] Problem registering labels to native space
How did you create
Dear freesurfer experts,
I have a series of labels corresponding to clusters of significant
activation in fsaverage space.
I want to map these back to native space using mri_label2label, however when
I view the individual (native) labels, the registration is way off and the
labels do not map
Hi John
can you email us your label2label cmdline?
cheers
Bruce
On Mon, 18 Jul 2011, John Richey
wrote:
Dear freesurfer experts,
I have a series of labels corresponding to clusters of significant
activation in fsaverage space.
I want to map these back to native space using
Richey
Cc: 'freesurfer@nmr.mgh.harvard.edu'
Subject: Re: [Freesurfer] Problem registering labels to native space
Hi John
can you email us your label2label cmdline?
cheers
Bruce
On Mon, 18 Jul 2011, John Richey
wrote:
Dear freesurfer experts,
I have a series of labels corresponding to clusters
if dialated would become contiguous).
-Original Message-
From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu]
Sent: Monday, July 18, 2011 11:20 AM
To: John Richey
Cc: 'freesurfer@nmr.mgh.harvard.edu'
Subject: Re: [Freesurfer] Problem registering labels to native space
Hi John
can you
: [Freesurfer] Problem registering labels to native space
Hi John
why are you using an affine volume registration for fsaverage? Why not use
surface registration?
Bruce
On Mon, 18 Jul 2011, John Richey wrote:
Hi Bruce - thanks for the reply.
Here is my command line:
mri_label2label --srcsubject
and not
surface-based labels.
-Original Message-
From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu]
Sent: Monday, July 18, 2011 12:00 PM
To: John Richey
Cc: 'freesurfer@nmr.mgh.harvard.edu'
Subject: RE: [Freesurfer] Problem registering labels to native space
Hi John
why are you
@nmr.mgh.harvard.edu'
Subject: Re: [Freesurfer] Problem registering labels to native space
You can't use a flirt matrix with mri_label2label. You can convert a flirt
matrix to the proper format with tkregister2 using the --fsl option (this
will allow you to check the reg as well).
doug
John Richey wrote:
Hi Bruce
...@nmr.mgh.harvard.edu]
Sent: Monday, July 18, 2011 12:38 PM
To: John Richey
Cc: 'Bruce Fischl'; 'freesurfer@nmr.mgh.harvard.edu'
Subject: Re: [Freesurfer] Problem registering labels to native space
You can't use a flirt matrix with mri_label2label. You can convert a flirt
matrix to the proper format
...@nmr.mgh.harvard.edu]
Sent: Monday, July 18, 2011 3:11 PM
To: John Richey
Cc: 'Bruce Fischl'; 'freesurfer@nmr.mgh.harvard.edu'
Subject: Re: [Freesurfer] Problem registering labels to native space
How did you create it? What is the actual fsaverage space? Is this an
FSFAST analysis?
doug
John Richey wrote:
Hi
: Douglas N Greve [mailto:gr...@nmr.mgh.harvard.edu]
Sent: Monday, July 18, 2011 3:11 PM
To: John Richey
Cc: 'Bruce Fischl'; 'freesurfer@nmr.mgh.harvard.edu'
Subject: Re: [Freesurfer] Problem registering labels to native space
How did you create it? What is the actual fsaverage space
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