*To:* Freesurfer support list
mailto:freesurfer@nmr.mgh.harvard.edu>>
*Subject:* [Freesurfer] Problem with
freesurfer measures
*External Email - Use Caution *
Hello Fr
and volume (lh/rh.volume) but not folding index and white
>>>> matter volume)
>>>>
>>>> Any idea?
>>>>
>>>> El lun, 8 mar 2021 a las 16:04, Fischl, Bruce ()
>>>> escribió:
>>>>
>>>>> Hi Alberto
>>
>>
*On Behalf Of *Alberto Del Cerro Leon
*Sent:* Monday, March 8, 2021 7:02 AM
*To:* Freesurfer support list
mailto:freesurfer@nmr.mgh.harvard.edu>>
*Subject:* [Freesurfer] Problem with freesurfer
, Fischl, Bruce ()
>>> escribió:
>>>
>>>> Hi Alberto
>>>>
>>>>
>>>>
>>>>1. And 4. Are not properties of single surfaces – they are computed
>>>>from the white and the pial. For 2 and 3 that is really up to you
>&
mailto:freesurfer@nmr.mgh.harvard.edu>>
*Subject:* [Freesurfer] Problem with freesurfer measures
*External Email - Use Caution *
Hello Freesurfer team, I am using an annotation file
that i've created previously to obtain the measures of
gt; Hi Alberto
>>>
>>>
>>>
>>>1. And 4. Are not properties of single surfaces – they are computed
>>>from the white and the pial. For 2 and 3 that is really up to you
>>>
>>> Cheers
>>> Bruce
>>>
>>>
&
freesurfer-boun...@nmr.mgh.harvard.edu>
mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> *On Behalf
Of *Alberto Del Cerro Leon
*Sent:* Monday, March 8, 2021 7:02 AM
*To:* Freesurfer support list mailto:freesurfer@nmr.mgh.harvard.edu>>
*Subject:* [Frees
ingle surfaces – they are computed
>>from the white and the pial. For 2 and 3 that is really up to you
>>
>> Cheers
>> Bruce
>>
>>
>>
>> *From:* freesurfer-boun...@nmr.mgh.harvard.edu <
>> freesurfer-boun...@nmr.mgh.harvard.edu>
esurfer-boun...@nmr.mgh.harvard.edu>> *On Behalf Of
*Alberto Del Cerro Leon
*Sent:* Monday, March 8, 2021 7:02 AM
*To:* Freesurfer support list mailto:freesurfer@nmr.mgh.harvard.edu>>
*Subject:* [Freesurfer] Problem with freesurfer measures
*External Email - Use Caution *
>
>
> *From:* freesurfer-boun...@nmr.mgh.harvard.edu <
> freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Alberto Del Cerro
> Leon
> *Sent:* Monday, March 8, 2021 7:02 AM
> *To:* Freesurfer support list
> *Subject:* [Freesurfer] Problem with freesurfer measures
>
support list
Subject: [Freesurfer] Problem with freesurfer measures
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Hello Freesurfer team, I am using an annotation file that i've created
previously to obtain the measures of some ROIs. To do that i am using de
commands mri_surf2surf and mri_segsta
External Email - Use Caution
Hello Freesurfer team, I am using an annotation file that i've created
previously to obtain the measures of some ROIs. To do that i am using de
commands mri_surf2surf and mri_segstats. I want to obtain the following
measures:
1. Gray and White Matter Vo
Hi Mahshid
you need to give us a lot more information. What didn't work? We need the
full command you ran and the full screen output (in text form please, don't
send us a snapshot)
cheers
Bruce
On Fri, 23 Nov 2018, Mahshid Fouladivanda wrote:
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Hello Rashid,
I would start with getting a cmake command to succeed to try and do the
build. Try looking over the cmake build page here,
https://surfer.nmr.mgh.harvard.edu/fswiki/CMake
- where there is also makefile (makefile.wiki) you can downl
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Dear Mahshid,
could you provide some more details on what exactly is not working? E.g., Did
the installation complete without errors? What command are you typing, what
result do you expect and what is the actual result / error message?
> On November
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Hi Dear experts,
I downloaded and installed freesurfer on CentOS without any problem and also
worked with it. Recently I've switched on mint 19 (an Debian based operating
system) and I tried to setup freesurfer but, it does not worked. I would
appre
On 07/02/2018 01:48 AM, Soan Duong wrote:
>
>
> Dear FreeSurfer,
>
> My name is Soan Duong. I used FreeSurfer to segmentation some
> high-resolution T1w images (resolution of 0.5x0.533x0.533, size of
> 288x378x420), and got a couple of problems:
>
> 1.I ran the command: recon-all -i DH_anat.ni
Dear Bruce,
Thank you for your response.
So would you please guide me how I should register the image into MNI152
coordination?
And is the cvs_avg35_inMNI152, the MNI152 template?
Best Regards,
Mahtab.
On 3 June 2016 at 13:48, Bruce Fischl wrote:
> Hi Mahtab
>
> we do all the analysis in nati
Hi Mahtab
we do all the analysis in native space and don't transform the data to a
template (although we do compute mappings to various templates).
As for your other question, there are too many variables to control for
(age, gender, scanner type, sequence) for us to distribute a normative
d
Dear Freesurfer,
The data that I'm using as a part of my study contains only the patients'
T1 images and we have not collected any control subjects yet. I want to
compare the cortical thickness of these subjects with a template (instead
of a control subject), but I'm confused which volume I need t
Hi Elissa,
The invalid drawable terminal output you can ignore when running Freeview.
Presumably bert is not located in /Applications/freesurfer/elissa_thesis/,
so that's why the bert commands are failing. Not the same subjects
directory that ABU is in.
To fix the tkmedit library error it lo
Hi Bruce,
> thanks for your answer. In fact, I wrote:
> -recon-all -i home/pmod/Bureau/freesurfer/subjects/Marie/image(n).nii -subjid
> image(n)
> in order to analyse my images. I created folders for each patient, but when I
> try to open these (tkmedit) I can't recover ... I have new folders
Hi Marie
what is the error? And what do you want to do with the PET and SPECCT
images? You would only give recon-all the anatomical (T-weighted) images.
The others you would probably want to register with bbregister.
cheers
Bruce
On Mon, 28 Mar 2011, Marie ERESUE wrote:
>
> Hi,
> I'd like to
Hi,
I'd like to compare registration between FSL and freesurfer. So I have to
import my images (I have 25 MRI, 25 CT and 75 SPECT) into freesurfer, with
recon-all if I understood. But my images are on NifTi extension and I have
error:
My program is for 1 image:
recon-all -i /home/pmod/Bureau/IR
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