On 8/19/2020 2:42 AM, Nathalie Mertens wrote:
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Dear,
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External Email - Use Caution
Dear,
I am not sure if the questions below were sent correctly to you, since I did
not receive any copy of it.
Please find my message below.
Many thanks, looking forward to your reply.
Kind regards,
Nathalie Mertens
Van: Nathalie Mertens
Datum:
After some investigation, I found that that command will not work. You
can run it in the normal way, and then run
mri_vol2vol --mov rbv.nii.gz --targ pet.nii.gz --regheader --fill-average
This will average all the rbv voxels that fall into a pet voxel (or you
could use --interp
I tried the following, but the program seems to seg fault. No output files
are created. Please help! Thank you.
Alternatively, is there a way to generate the "nopvc" image in RBV space?
Thanks!
*>>mri_gtmpvc --i pet.nii.gz --reg pet2mri.lta --psf 6 --seg gtmseg.mgz
--no-reduce-fov --o pvcout*
Can you send the full terminal output?
On 6/27/17 4:15 PM, SudEEpti wrote:
I tried the following, but the program seems to seg fault. No output
files are created. Please let me know what you think I might be
missing. Thank you!
>mri_gtmpvc --i pet.nii.gz --seg gtmseg.mgz --reg reg.lta --o
I tried the following, but the program seems to seg fault. No output files
are created. Please let me know what you think I might be missing. Thank
you!
>mri_gtmpvc --i pet.nii.gz --seg gtmseg.mgz --reg reg.lta --o $PWD/s1
--no-reduce-fov
*mri_gtmpvc done*
>mri_gtmpvc --i pet.nii.gz --seg
It is not set up to do it this way, but there is a work-around. Run
mri_gtmpvc without --rbv but with --no-reduce-fov, then run it again
specifying the gtmpvcoutput/seg/seg.nii.gz file as the segmentation and
--regheader instead of --reg.
On 12/05/2016 11:52 AM, SudEEpti wrote:
> Hello,
>
>
Hello,
Is there a way to save the PVC (RBV) output in native PET resolution,
before upsampling?
Would you also be able to share the command that is used for upsampling? I
would like to play with a different type of interpolation.
Thank you very much.
Su
