Works. Thank you !
Flavio.
--- On Tue, 5/26/09, Nick Schmansky wrote:
From: Nick Schmansky
Subject: Re: [Freesurfer] Re: Transform orig.mgz image to native space
To: "Flavio Seixas"
Cc: "Bruce Fischl" , "Freesurfer Mailing List"
, t...@nmr.mgh.harvard.edu, &qu
try:
mri_convert orig.mgz -rl rawavg.mgz orig.nii
On Tue, 2009-05-26 at 18:10 -0700, Flavio Seixas wrote:
> The native data has (0.449219, 0.449219, 0.45) mm size and (512, 512,
> 356) voxels. The orig.mgz has (256, 256, 256) voxels. I would like to
> transform orig.mgz back to native data coord
I see. It's in scanner coords, but not the same voxel dimensions. Nick's
solution should do the trick
On Tue, 26 May 2009, Flavio Seixas wrote:
The native data has (0.449219, 0.449219, 0.45) mm size and (512, 512, 356)
voxels. The orig.mgz has (256, 256, 256) voxels. I would like to transform
The native data has (0.449219, 0.449219, 0.45) mm size and (512, 512, 356)
voxels. The orig.mgz has (256, 256, 256) voxels. I would like to transform
orig.mgz back to native data coordinates.
Best Regards,
Flavio.
--- On Tue, 5/26/09, Bruce Fischl wrote:
From: Bruce Fischl
Subject: Re: Tran
the data should already be in the native space, not talairach.
cheers,
Bruce
On Tue, 26 May 2009, Flavio Seixas wrote:
Hi Hii,
I'm beginner Freesurfer user. I segmented brain subcortical structures using Freesurfer
(recon-all). The process was concluded ok. How could I convert aseg.mgz and o
