Works. Thank you ! Flavio.
--- On Tue, 5/26/09, Nick Schmansky <ni...@nmr.mgh.harvard.edu> wrote: From: Nick Schmansky <ni...@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Re: Transform orig.mgz image to native space To: "Flavio Seixas" <flsei...@yahoo.com.br> Cc: "Bruce Fischl" <fis...@nmr.mgh.harvard.edu>, "Freesurfer Mailing List" <freesurfer@nmr.mgh.harvard.edu>, t...@nmr.mgh.harvard.edu, "Doug Greve" <gr...@nmr.mgh.harvard.edu> Date: Tuesday, May 26, 2009, 6:12 PM try: mri_convert orig.mgz -rl rawavg.mgz orig.nii On Tue, 2009-05-26 at 18:10 -0700, Flavio Seixas wrote: > The native data has (0.449219, 0.449219, 0.45) mm size and (512, 512, > 356) voxels. The orig.mgz has (256, 256, 256) voxels. I would like to > transform orig.mgz back to native data coordinates. > > Best Regards, > Flavio. > > > --- On Tue, 5/26/09, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > > From: Bruce Fischl <fis...@nmr.mgh.harvard.edu> > Subject: Re: Transform orig.mgz image to native space > To: "Flavio Seixas" <flsei...@yahoo.com.br> > Cc: freesurfer@nmr.mgh.harvard.edu, t...@nmr.mgh.harvard.edu, > gr...@nmr.mgh.harvard.edu > Date: Tuesday, May 26, 2009, 5:56 PM > > the data should already be in the native space, not talairach. > > cheers, > Bruce > > On Tue, 26 May 2009, Flavio Seixas wrote: > > > Hi Hii, > > > > I'm beginner Freesurfer user. I segmented brain subcortical > structures using Freesurfer (recon-all). The process was > concluded ok. How could I convert aseg.mgz and orig.mgz back > to native space? I've tried "mri_convert orig.mgz orig.nii -ot > nii --apply_inverse_transform transforms/talairach.xfm", but > didn't work. Anyone could help me? I would appreciate any > suggestion. > > > > Thank you, > > Flávio. > > > > > > > > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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