Re: [Freesurfer] Rookie question

2022-07-17 Thread Douglas N. Greve
The scout is a short, low resolution scan used by the scanner operator to set the field of view for later scans; it is not use ful. The SpinEcho looks like it is part of a functional or diffusion sequence to perform B0 distortion correction (so not used in the anatomical analysis) I don't know

Re: [Freesurfer] Rookie question

2022-07-14 Thread Addison, Reuben
I have a rookie question regarding free surfer after going through the excellent course on youtube First time I know the free surfer does the reconstruction on the anatomical scan (eg., T1t1_mprage_sag_p2_iso.nii) I see 3 other files in my data that were never used in the tutorials