Re: [Freesurfer] Segmentation fault using mri_label2vol

2015-10-14 Thread Syeda Maryam
So the strangest thing happened. Just on a hunch, I logged out of the server then logged back in, and now it's running! It's a mystery to me. Thanks again, I'll check the RAM specs and get back to you. For now though it seems to be working. Hope it stays that way! Best,Syeda On Wednesda

Re: [Freesurfer] Segmentation fault using mri_label2vol

2015-10-14 Thread Bruce Fischl
Hi Syeda it doesn't die when I run it locally. How much RAM do you have on the machine that it crashes on? If you want a new version we can send you one. cheers Bruce On Wed, 14 Oct 2015, Syeda Maryam wrote: Hi Bruce, I just sent you the files on filedrop! I thought it might have something

Re: [Freesurfer] Segmentation fault using mri_label2vol

2015-10-14 Thread Syeda Maryam
Hi Bruce,I just sent you the files on filedrop! I thought it might have something to do with the freesurfer version since the mri_label2vol comman works fine on my local machine and the segmentation fault I was talking about only happens when I try to run it on the server our research group is u

Re: [Freesurfer] Segmentation fault using mri_label2vol

2015-10-14 Thread Bruce Fischl
it's possible, or something to do with your images. You can use either our filedrop or ftp site to send them to me if you want On Wed, 14 Oct 2015, Syeda Maryam wrote: So for some reason my mail with the attachments won't get delivered...the message size exceeds the limits. I was wondering if

Re: [Freesurfer] Segmentation fault using mri_label2vol

2015-10-14 Thread Syeda Maryam
So for some reason my mail with the attachments won't get delivered...the message size exceeds the limits. I was wondering if the segmentation fault error I'm getting might be do to some problem in the freesurfer version I'm running? Thanks,Syeda On Wednesday, October 14, 2015 12:09 PM,

Re: [Freesurfer] Segmentation fault using mri_label2vol

2015-10-14 Thread Bruce Fischl
Hi Syeda that commnand doesn't segfault when I try it on another subject here. If you email me the aseg.mgz and the rawavg.mgz I'll take a look cheers Bruce On Wed, 14 Oct 2015, Syeda Maryam wrote: Hello Freesurfer experts, I'm getting a segmentation fault when I use the mri_label2vol co

[Freesurfer] Segmentation fault using mri_label2vol

2015-10-14 Thread Syeda Wajiha Maryam
Hello Freesurfer experts, I'm getting a segmentation fault when I use the mri_label2vol command to push aseg labels from freesurfer space to my subject's original T1 space (using the example given on the freesurfer website). I'm not sure why this is happening...I've tried changing the parameters c

[Freesurfer] Segmentation fault using mri_label2vol

2015-10-14 Thread Syeda Maryam
Hello Freesurfer experts, I'm getting a segmentation fault when I use the mri_label2vol command to push aseg labels from freesurfer space to my subject's original T1 space (using the example given on the freesurfer website). I'm not sure why this is happening...I've tried changing the parameters