Re: [Freesurfer] Segmenting deep and outer white matter

2015-09-07 Thread Douglas Greve
al and Brain Sciences Dept. Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755 Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419 Sent: Saturday, September 05, 2015 at 4:23 PM From: "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> To: "Freesurfer support list"

Re: [Freesurfer] Segmenting deep and outer white matter

2015-09-07 Thread John Anderson
2 PM From: "Douglas Greve" <gr...@nmr.mgh.harvard.edu> To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Segmenting deep and outer white matter The best thing is to take a look at the wmparc. It was not really designed to be deep and superficial. There is only one "deep"  WM seg

Re: [Freesurfer] Segmenting deep and outer white matter

2015-09-07 Thread Bruce Fischl
nior Research Associate > Psychological and Brain Sciences Dept. > Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755 > Phone: +1 (603) 646-9834 > Fax: +1 (603) 646-1419 > > > Sent: Monday, September 07, 2015 at 1:02 PM > From: "Douglas Greve" &

Re: [Freesurfer] Segmenting deep and outer white matter

2015-09-05 Thread John Anderson
7, Hanover, NH 03755 Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419     Sent: Saturday, September 05, 2015 at 4:23 PM From: "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> To: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Segmenting

[Freesurfer] Segmenting deep and outer white matter

2015-09-05 Thread John Anderson
Hi Freesurfers, I am interested in studying the difference between the outer and deep white matter volume in my study groups.   I am thinking in the following procedures: 1. If there is any way in Freesurfer to do segmentation for the white matter (only in the depth of 3 cm) starting from the

Re: [Freesurfer] Segmenting deep and outer white matter

2015-09-05 Thread Bruce Fischl
Hi John sorry, meant to respond but spaced it. Have you checked out the wmparc.mgz? It may have what you need. cheers Bruce On Sat, 5 Sep 2015, John Anderson wrote: Hi Freesurfers, I am interested in studying the difference between the outer and deep white matter volume in my study

Re: [Freesurfer] Segmenting deep and outer white matter

2015-09-05 Thread Bruce Fischl
> To: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Segmenting deep and outer white matter Hi John sorry, meant to respond but spaced it. Have you checked out the wmparc.mgz? It may have what you need. cheers Bruce On Sat, 5 Sep 2015, John An