Hi John
sorry, meant to respond but spaced it. Have you checked out the
wmparc.mgz? It may have what you need.
cheers
Bruce
On Sat, 5 Sep 2015, John Anderson
wrote:
Hi Freesurfers,
I am interested in studying the difference between the outer and deep white
matter volume in my study groups.
I am thinking in the following procedures:
1. If there is any way in Freesurfer to do segmentation for the white matter
(only in the depth of 3 cm) starting from the cortex. Then second
segmentation for the deep white matter. Is this possible in Freesurfer?
2. Creating a mask ( using mri_binarize) for all the superficial white
matter Freesurfer's labels and another mask for the deep white matter ( how
can I find the Freesurfer deep white matter labels and the outer white
matter labels ?)
3. If there is any atlas that can separate the outer and deep white matter
then running recon-all depending on this new atlas.
Thanks in advance for any suggestion.
John
Bests,
John Anderson
Senior Research Associate
Psychological and Brain Sciences Dept.
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834
Fax: +1 (603) 646-1419
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