] Simple question regarding -T2 and -FLAIR flags (freesurfer v6) {Disarmed}
Hi!
recon-all -all -3T -s /sub008 -hippocampal-subfields-T1T2 /sub008/sub_008_T2.nii.gz T2Flair
looks good. The flag -hippocampal-subfields-T1FLAIR does not even exist ;-)
Cheers,
/Eugenio
Juan Eugenio Iglesias
Hi!
recon-all -all -3T -s /sub008 -hippocampal-subfields-T1T2
/sub008/sub_008_T2.nii.gz T2Flair
looks good. The flag -hippocampal-subfields-T1FLAIR does not even exist ;-)
Cheers,
/Eugenio
Juan Eugenio Iglesias
ERC Senior Research Fellow
Translational Imaging Group
University College London
http
Subject: Re: [Freesurfer] Simple question regarding -T2 and -FLAIR flags
(freesurfer v6) {Disarmed}
Hi Erik
Eugenio can confirm, but I don't think the subfield stuff cares. The
-hippocampal-subfields-T1T2 means use multiple inputs, but it doesn't
assume anything about the distribution of i
03 February 2017 10:56
To: Freesurfer support list
Subject: Re: [Freesurfer] Simple question regarding -T2 and -FLAIR flags
(freesurfer v6) {Disarmed}
Thanks for the quick reply. I'll re-run my subjects with the -FLAIR flag.
Joe
Erik O'Hanlon
Postdoctoral researcher
[IMAGE]
RC
stion regarding -T2 and -FLAIR flags (freesurfer v6) {Disarmed}
Thanks for the quick reply. I'll re-run my subjects with the -FLAIR flag.
Joe
Erik O'Hanlon
Postdoctoral researcher
RCSI Psychiatry
Royal College of Surgeons in Ireland
Beaumont Road, Beaumont, D9, Ireland
T: 80937
rding -T2 and -FLAIR flags
(freesurfer v6)
Hi Joe
there are slight differences, and for sure we reserve the right to use
the knowledge that it is a FLAIR scan in the algorithms, so you should
probably rerun
cheers
Bruce
On Thu, 2 Feb 2017, Joe Necus (PGR) wrote:
>
> Hello,
>
>
>
Hi Joe
there are slight differences, and for sure we reserve the right to use
the knowledge that it is a FLAIR scan in the algorithms, so you should
probably rerun
cheers
Bruce
On Thu, 2 Feb 2017, Joe Necus (PGR) wrote:
>
> Hello,
>
>
> I am running recon-all on the latest version of freesu
It will behave differently as some of the parameters change depending
upon whether it is a T2 or FLAIR. This will only affect the surface creation
On 02/02/2017 05:19 PM, Joe Necus (PGR) wrote:
>
> Hello,
>
>
> I am running recon-all on the latest version of freesurfer (Version 6)
> and would l
Hello,
I am running recon-all on the latest version of freesurfer (Version 6) and
would like to know whether there is any difference between using the -T2
-T2Pial and -Flair flags.
I am currently running recon-all with a T1 and FLAIR image, but have used the
-T2 -T2pial flags and would like
