Re: [Freesurfer] Skullstrip problems

2015-06-30 Thread Paul Schauer
Hi Ani, thank you,too. This is exactly what I wanted to know!:-) Have a nice day! Best, Paul Zitat von Ani Varjabedian : > Hi Paul, > > As long as your surfaces are unaffected (no brain is missing), the > dura does not matter. Ideally, the brainmask.mgz should be /only/ > brain. > > -Ani

Re: [Freesurfer] Skullstrip problems

2015-06-30 Thread Paul Schauer
ra >>> volume as well, it's not going to affect your brain volume measure. >> >> Best regards, >> Jennifer Kriegel >> >> -Original Message- >> From: freesurfer-boun...@nmr.mgh.harvard.edu >> [mailto:freesurfer-boun...@nmr.mgh.harvard.ed

Re: [Freesurfer] Skullstrip problems

2015-06-30 Thread Ani Varjabedian
Hi Paul, As long as your surfaces are unaffected (no brain is missing), the dura does not matter. Ideally, the brainmask.mgz should be /only/ brain. -Ani On 06/30/2015 08:03 AM, Paul Schauer wrote: Hi all, I ran the normal recon-all -i... -s... -all on a couple of subjects and I realized t

Re: [Freesurfer] Skullstrip problems

2015-06-30 Thread Kriegel, Jennifer Lynn Sarai
ehalf Of Paul Schauer Sent: Tuesday, June 30, 2015 7:49 AM To: Freesurfer support list Subject: Re: [Freesurfer] Skullstrip problems Hi Jennifer, thank you for your speedy answer.:-) Unfortunately I didn't understand all of it. The problems with the skullstrip did not (!) affect any of th

Re: [Freesurfer] Skullstrip problems

2015-06-30 Thread Paul Schauer
gt; [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Paul > Schauer > Sent: Tuesday, June 30, 2015 7:03 AM > To: freesurfer@nmr.mgh.harvard.edu > Subject: [Freesurfer] Skullstrip problems > > Hi all, > > I ran the normal recon-all -i... -s... -all on a couple o

Re: [Freesurfer] Skullstrip problems

2015-06-30 Thread Kriegel, Jennifer Lynn Sarai
---Original Message- From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Paul Schauer Sent: Tuesday, June 30, 2015 7:03 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Skullstrip problems Hi all, I ran the normal recon-all -i... -s... -all on