ouglas N. Greve, Ph.D.
> MGH-NMR Center
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:41:52 Uhr
Betreff: Re: [Freesurfer] Statistic analysing for a mask
what's your cmd? You need to make sure to add --in lh.thickness to get
thickness in the summary file
Alexandru Hanganu wrote:
Thank you Nick, and Doug for your answers.. I used both "--reshape" flag and
"-
of 3D to surface ?
Thank you for your help,
Alex.
Von: Doug Greve <[EMAIL PROTECTED]>
An: Alexandru Hanganu <[EMAIL PROTECTED]>
CC: FS Mailing List
Gesendet: Montag, den 8. Dezember 2008, 19:41:52 Uhr
Betreff: Re: [Freesurfer] Statistic analysin
what's your cmd? You need to make sure to add --in lh.thickness to get
thickness in the summary file
Alexandru Hanganu wrote:
Thank you Nick, and Doug for your answers. I used both "--reshape"
flag and "--noreshape" flag and the results after "mri_segstats" were
in both cases:
.
.
Thank you Nick, and Doug for your answers. I used both "--reshape" flag and
"--noreshape" flag and the results after "mri_segstats" were in both cases:
.
.
.
Voxel Volume is 1 mm^3
Generating list of segmentation ids
Found 2 segmentations
Computing statistics for each
Try adding --noreshape to both mri_vol2surf and mri_surf2surf cmd lines.
doug
Alexandru Hanganu wrote:
Dear Freesurfer users,
We have an MNI mask and we want to apply this mask on a group of
subjects for small volume correction.
so we did the following steps:
1. cd $SUBJECTS_DIR/fsaverage/
Alexandru,
You will want to add the flag --reshape to the mri_surf2surf command.
That will fix the dimension mismatch problem.
Nick
On Sat, 2008-12-06 at 14:43 +, Alexandru Hanganu wrote:
> Dear Freesurfer users,
>
> We have an MNI mask and we want to apply this mask on a group of
> subjec
Dear Freesurfer users,
We have an MNI mask and we want to apply this mask on a group of subjects for
small volume correction.
so we did the following steps:
1. cd $SUBJECTS_DIR/fsaverage/surf
fslregister --s fsaverage --mov /path/to/TT_avg152T1.nii --reg
TT_avg152T1_to_fsaverage.dat
2. cd $SUB
