Hello freesurfers,
I currently have a series of images with various TR,TE,TI,FA values. I
would like to use mri_ca_train to create a .gca atlas based on these
segmented volumes. Unfortunately, they all have slightly different control
parameters (TR,TE,TI,FA). Is there any way around this probl
Hi Mark
the formatting got messed up so I can't parse your table. You can get
around this using mri_modify, and just setting everything to 0. As for the
effects, look at the images and see what you think.
cheers
Bruce
On Thu, 1
Aug 2013, Mark Plantz wrote:
Hello freesurfers,
I curren
For some reason, when I run that command, I get the following output:
Input volume is : seg_mov
Output volume is : seg_mov_2
There are no errors, but when I check "mri_info" of the output file, the
TR, TE, etc. values are still non-zero. Any ideas what could cause that to
happen?
Thanks!
MP
can you send us the full command line and screen output of what you ran?
On
Mon, 5 Aug 2013, Mark Plantz wrote:
For some reason, when I run that command, I get the following output:
Input volume is : seg_mov
Output volume is : seg_mov_2
There are no errors, but when I check "mri_info" of the
Command and output:
dhcp-165-124-23-213:Desktop IngvalsonLab$ mri_modify -tr 0 -te 0 -ti 0 -fa
0 seg.mgz seg_new.mgz
Input volume is : seg.mgz
Output volume is : seg_new.mgz
dhcp-165-124-23-213:Desktop IngvalsonLab$
Then, I checked the mri_info for each of the files (input and output)
- *in
Oh, I see. It checks against zero to see if things are specified. I'll
fix that, but in the meantime why don't yo uset everything to 1 instead
of 0
On Mon, 5 Aug 2013, Mark Plantz wrote:
Command and output:
dhcp-165-124-23-213:Desktop IngvalsonLab$ mri_modify -tr 0 -te 0 -ti 0 -fa 0
seg.mgz
