Re: [Freesurfer] tkmedit error

Hi Veronica if freeview works for you then you should just use it. We have deprecated tkmedit and are trying not to invest any time or energy in it any longer. cheers Bruce On Tue, 14 Mar 2017, Veronica Munoz wrote: > Dear all, > > I'm trying to use tkmedit to verify my recon-all results but

Re: [Freesurfer] TKMEDIT error when SSH'ing

st Cc: freesurfer Subject: Re: [Freesurfer] TKMEDIT error when SSH'ing Have you verified that the machine you are ssh'ing into will display tkmedit even if you are not ssh'ing into it? I ask because OSX 10.6 is an end-of-life operating system and that error is usually associated with incomp

Re: [Freesurfer] TKMEDIT error when SSH'ing

Have you verified that the machine you are ssh'ing into will display tkmedit even if you are not ssh'ing into it? I ask because OSX 10.6 is an end-of-life operating system and that error is usually associated with incompatible graphics card. However, even if it did work while sitting at the host

[Freesurfer] TKMEDIT error when SSH'ing

Hi Freesurfer folks I am SSH'ing from one MAC to another. both mac's are running Mac Os 10.6.8 I am ssh'ing with -Y option when I try to run tkmedit I get the error; Thu May 21 09:54:24 cerebrum.uwm.edu tkmedit.bin[56625] : kCGErrorIllegalArgument: _CGSFindSharedWindow: WID 2763 Thu May 21

Re: [Freesurfer] tkmedit error

Thank you very much. I solve it using the method. Wang Kangcheng From: Z K Date: 2014-07-31 22:00 To: Freesurfer support list CC: kangchengwang0808 Subject: Re: [Freesurfer] tkmedit error The XQuartz upgrade from v2.7.5 to v2.7.6 broke some of the FreeSurfer GUIs. Please reinstall XQuartz

Re: [Freesurfer] tkmedit error

The XQuartz upgrade from v2.7.5 to v2.7.6 broke some of the FreeSurfer GUIs. Please reinstall XQuartz v2.7.5. It can be downloaded from this page: http://xquartz.macosforge.org/trac/wiki/Releases -Zeke On 07/30/2014 10:54 PM, wang kangcheng wrote: > Dear experts > when I use the tkedit, it re

[Freesurfer] tkmedit error

Dear experts when I use the tkedit, it report the error (in the following). How could I solve it? tkmedit started: Thu Jul 31 10:41:56 2014 /Applications/freesurfer/tktools/tkmedit.bin patient_con_sub126 brainmask.tight.mgz -aux T1.mgz $Id: tkmedit.c,v 1.343 2011/03/01 01:41:22 nicks Exp $

Re: [Freesurfer] tkmedit error message

Hi Elissa has tkmedit ever worked? This looks like an internal mac problem. For example, a google search turns up: https://discussions.apple.com/message/12614494#12614494 does freeview work? As far as the invalid messages go, you'll need to send us the details for us to comment. And yes, upda

[Freesurfer] tkmedit error message

Hello, I am a new freesurfer user. I tried to view subject data with tkmedit for the first time after the recon-all process finished without errors. Here is what I typed and the message I got: [ariana:~/Desktop/ELISSA_ THESIS/ATO] cmurphy% tkmedit ATO brainmask.mgz -aux T1.mgz -surfs -aseg Wed Oc

Re: [Freesurfer] tkmedit error

Hi Ehsan what is the command you ran? And what is your SUBJECTS_DIR env variable set to when you run it? cheers Bruce On Mon, 25 Feb 2013, Ehsan Tadayon wrote: Hello I'm new to freesurfer, I have some .nii images that i converted to  .mgz via mri_converter in freesurfer and run recon-all on

[Freesurfer] tkmedit error

Hello I'm new to freesurfer, I have some .nii images that i converted to .mgz via mri_converter in freesurfer and run recon-all on them! it seems everything is fine and i've got stats in m subjects folders. but when I try to do tkmedit to visualize images it gives me an error: Tkmedit couldn't

[Freesurfer] tkmedit error message even though tksurfer runs correctly

Hello! I am brand new to this software (and command for that matter) and need some help. After installing all the software, when I enter tkmedit in the xterminal, I receive an error message that looks like this: X Error of failed request: BadRequest (invalid request code or no such operation) ?

[Freesurfer] Tkmedit error

-- Dr.Antonella Kis, PhD Clinical Research Project Coordinator The Hospital for Sick Children (SickKids) Diagnostic Imaging Department Neurosciences and Mental Health Sessional Lecturer Life Sciences, Physics Department University of Toronto at Scarborough Hello,

[Freesurfer] tkmedit error

Hi, I got an error with tkmedit command "freeglut (/home/pom/freesurfer/freesurfer/bin/tkmedit.bin): Unable to create direct context rendering for window 'Medit: ' This may hurt performance. Xlib: extension "XFree86-DRI" missing on display ":0.0". The only DRI related file I have is called /us

Re: [Freesurfer] tkmedit error

If you are using Ubuntu: http://ubuntu-tutorials.com/2007/10/26/restricted-drivers-manager-vs-envy/ With CentOS and NVidia: http://www.linlap.com/wiki/Configuring+a+NVIDIA+graphics+chip+for+CentOS+and+RHEL+5

Re: [Freesurfer] tkmedit error

Thanks for the quick responses. Is there an easy way to enable these drivers? (We unfortunately don't have an IT linux expert here). At 03:38 PM 4/23/2009, Pedro Paulo de Magalhães Oliveira Junior wrote: Probably you updated the kernel (or the OS did by himself) and the restricted drivers (AT

Re: [Freesurfer] tkmedit error

Probably you updated the kernel (or the OS did by himself) and the restricted drivers (ATI/NVidia) are not enabled by default. --- Pedro Paulo de M. Oliveira Junior Diretor de Operações Netfilter & SpeedComm Telecom --- Novo Netfilter 3.0 www.

Re: [Freesurfer] tkmedit error

Dana, Its a display problem. The reconstruction was not affected. Nick On Thu, 2009-04-23 at 15:24 -0400, Dana W. Moore wrote: > I am processing a new brain on the same linux station I've been using > FreeSurfer successfuly on for months now, but when I recently > rebooted the machine, I got

[Freesurfer] tkmedit error

I am processing a new brain on the same linux station I've been using FreeSurfer successfuly on for months now, but when I recently rebooted the machine, I got a message saying it was running in basic display/graphics mode. I don't know why the machine went into this mode. Now, when I try to

Re: [Freesurfer] tkmedit error niiread

This is the same problem as before. You'll need to either get a new version of freesurfer or convert the zmap through freesurfer, eg mri_convert zstats1.nii.gz zstats1.nii.gz if you have the new version of mri_convert. doug uzay emir wrote: Hi I am trying to Overlay zmap onto the orig volu

[Freesurfer] tkmedit error niiread

Hi I am trying to Overlay zmap onto the orig volume. But i gives an error related to niiRead(). Following lines are the output when i try run. [EMAIL PROTECTED] orig]$ tkmedit akkaya orig.mgz lh.white -overlay Akkaya_Zuhre_1_9+.feat/stats/zstat1.nii.gz -overlay-reg Akkaya_Zuhre_1_9

Re: [Freesurfer] TKMEdit error on Mac OS 10.4.7

Kent, Freesurfer does not yet support the new Intel Mac, and the problem with tkmedit is one of the known problems seen with using the powerpc build on such machines. We plan on providing an Intel Mac freesurfer build in the coming months. The gcc warnings can be ignored. Nick On Mon, 2006-08

[Freesurfer] TKMEdit error on Mac OS 10.4.7

Hi, I have a brand new Macbook pro with the dual-core intel chip. I downloaded and installed the most recent verision of freesurfer. When I run the configuration script I get source $FREESURFER_HOME/SetUpFreeSurfer.csh freesurfer-Darwin-tiger-stable-pub-v3.0.3 Setting up envi