Re: [Freesurfer] Trac-all on a cluster with PBS/torque

2012-04-27 Thread Anastasia Yendiki
Hi Knut - If I understand correctly, your modification was replacing fsl_sub_seychelles with fsl_sub? a.y On Fri, 27 Apr 2012, Knut J Bjuland wrote: Hi I am trying to run Trac-all on a cluster with PBS/torque. The trac-all scripts was modified to run with qsub, but the second stage in

Re: [Freesurfer] Trac-all on a cluster with PBS/torque

2012-04-27 Thread Knut J Bjuland
Hi Anastasia I think this hack was also added ## Steinar, steinar, commnet out this to fool the program to run under PBS ## date 20 april 2012 ## hack #if ($?PBS_JOBID) then # echo ERROR: Do not submit $ProgName as a job with pbsubmit or qsub. # echo ERROR: Run it directly on the command

Re: [Freesurfer] Trac-all on a cluster with PBS/torque

2012-04-27 Thread Anastasia Yendiki
Hi Knut - I modified fsl_sub to work on our own PBS cluster. This modified version is fsl_sub_seychelles. Anything that works with the original fsl_sub should also work with fsl_sub_seychelles. You can modify either of the two to make it work on your cluster. If you do make it more general to