Re: [Freesurfer] Tracula problems initializing pathway

2013-01-14 Thread Anastasia Yendiki
Hi Cat - 1 out of 18 is the left CST. That one usually isn't hard to initialize b/c it's not a part of the brain where it's especially difficult to align a typical individual to the atlas. I'd wait to see the final outcome before declaring defeat, but is there any chance that the top of the br

[Freesurfer] Tracula problems initializing pathway

2013-01-14 Thread Cat Chong
Hello Experts I am still at the first pre-proc step for Tracula and although the script is running, it seems to have difficulty initializing the first pathway (1 out of 18) Please see below script excerpt: Is that normal that it takes this many trials to initiate a pathway? Cheers, Catherine WA