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I'm a Philips user as well. Creating a hierarchical directory tree is
sufficient enough, but for one thing. Nifti files do not carry the
information normally stored in DICOM header, and FS-Fast requires the f.nii
to have embeded info about the
Right, I can run recon-all for the structural run. But what about for a
functional run where all I have is one nifti per subject? I meant for
preprocessing etc. the functional things, if I manually create the hierarchy,
is that one raw .nii per subject enough info to carry out the rest of the
Hi Stephanie
you shouldn't have to create the directory structure or anything. If you
have nifti files you can give those to recon-all as input in the same way
you would dicom (with -i directories and do it's thing
cheers
Bruce
On Sat,
2 Jun 2018, DeCross, Stephanie N. wrote:
Hi,
I have
Hi,
I have scans from a Philips scanner I want to process with FreeSurfer.
Previously, the scans have been downloaded in the Philips PAR/REC format and
converted into niftis, and those niftis have been used as the raw inputs in
other imaging pipelines.
Instead of dredging up the original
