Re: [Freesurfer] Using only a aparc+aseg input file for TRACULA

2021-10-21 Thread Alexopoulos, Dimitrios
Subject: Re: [Freesurfer] Using only a aparc+aseg input file for TRACULA * External Email - Caution * Jim, You could run set cmd = (mri_cc -aseg aseg.mgz -o aseg_CCseg.mgz $subj) to get the CC lables. Lilla From: freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesur

Re: [Freesurfer] Using only a aparc+aseg input file for TRACULA

2021-10-21 Thread Alexopoulos, Dimitrios
lf Of Yendiki, Anastasia Sent: Thursday, October 21, 2021 6:56 PM To: Freesurfer support list Subject: Re: [Freesurfer] Using only a aparc+aseg input file for TRACULA * External Email - Caution * This won't be good for the cc.* tracts for sure (in the new version we have the entire CC cove

Re: [Freesurfer] Using only a aparc+aseg input file for TRACULA

2021-10-21 Thread Yendiki, Anastasia
on behalf of Alexopoulos, Dimitrios Sent: Thursday, October 21, 2021 2:59 PM To: Freesurfer support list Subject: Re: [Freesurfer] Using only a aparc+aseg input file for TRACULA External Email - Use Caution External Email - Use Caution Anastasia, Upon closer inspection t

Re: [Freesurfer] Using only a aparc+aseg input file for TRACULA

2021-10-21 Thread Alexopoulos, Dimitrios
suggested below? Jim From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Alexopoulos, Dimitrios Sent: Thursday, October 21, 2021 5:08 PM To: Freesurfer support list Subject: Re: [Freesurfer] Using only a aparc+aseg input file for TRACULA * External Email - Caution * External Email

Re: [Freesurfer] Using only a aparc+aseg input file for TRACULA

2021-10-21 Thread Alexopoulos, Dimitrios
__ From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Zollei, Lilla,Ph.D. Sent: Thursday, October 21, 2021 3:39:29 PM To: Freesurfer support list Subject: Re: [Freesurfer] Using only a aparc+aseg input file for TRACULA * External Email - Caution * Jim, You could run set cmd = (m

Re: [Freesurfer] Using only a aparc+aseg input file for TRACULA

2021-10-21 Thread Zollei, Lilla,Ph.D.
Subject: Re: [Freesurfer] Using only a aparc+aseg input file for TRACULA External Email - Use Caution External Email - Use Caution Anastasia, Upon closer inspection the aparc+aseg we have are analogous to the FS labeling, however, the CC is not segmented, it is simply labelled as

Re: [Freesurfer] Using only a aparc+aseg input file for TRACULA

2021-10-21 Thread Alexopoulos, Dimitrios
but not include the CC minor/major tracts? Jim From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Yendiki, Anastasia Sent: Wednesday, October 20, 2021 2:12 PM To: Freesurfer support list Subject: Re: [Freesurfer] Using only a aparc+aseg input file for TRACULA * External Email

Re: [Freesurfer] Using only a aparc+aseg input file for TRACULA

2021-10-20 Thread Alexopoulos, Dimitrios
External Email - Use Caution Thank you Anastasia. Jim From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Yendiki, Anastasia Sent: Wednesday, October 20, 2021 2:12 PM To: Freesurfer support list Subject: Re: [Freesurfer] Using only a aparc+aseg input file for TRACULA

Re: [Freesurfer] Using only a aparc+aseg input file for TRACULA

2021-10-20 Thread Yendiki, Anastasia
a aparc+aseg input file for TRACULA External Email - Use Caution External Email - Use Caution Hi, It was my understanding that TRACULA only uses the aparc+aseg segmentation from the standard structural output from FS 7.1.1., and specifically for the relative positions (left

[Freesurfer] Using only a aparc+aseg input file for TRACULA

2021-10-20 Thread Alexopoulos, Dimitrios
External Email - Use Caution Hi, It was my understanding that TRACULA only uses the aparc+aseg segmentation from the standard structural output from FS 7.1.1., and specifically for the relative positions (left, right, anterior, etc.) of each tract with respect to the segmentati