Re: [Freesurfer] Vertex information lookup

2008-07-28 Thread Doug Greve
I'm not sure there is, though the format is pretty simple. You can find an example in the label directory of one of your subjects. Basically, the first two lines are header (see example). Then each following line has 5 numbers: 1. vertex number (0-based) 2. x 3. y 4. z 5. stat you can just s

Re: [Freesurfer] Vertex information lookup

2008-07-26 Thread Pádraig Kitterick
Many thanks for the tip. Is there any documentation on label files? I can't seem to find any on the wiki... Thanks, Padraig Doug Greve wrote: You can create a label file with the vertices you want, then use mri_label2label, specifying fsaverage as the target subject and --regmethod volume. T

Re: [Freesurfer] Vertex information lookup

2008-07-25 Thread Doug Greve
You can create a label file with the vertices you want, then use mri_label2label, specifying fsaverage as the target subject and --regmethod volume. This will convert the coordinates into mni305 doug Pádraig Kitterick wrote: Dear list, I wish to obtain information about a list of surface ve

[Freesurfer] Vertex information lookup

2008-07-23 Thread Pádraig Kitterick
Dear list, I wish to obtain information about a list of surface vertices, including their coordinates in MNI305 and Talairach spaces. Is there any tool that can provide this information at the command line? I can get the information by loading tksurfer and selecting the vertex, but this is sl