This is not a problem with the contrasts, it is an issue with the mask. How did
you create the mask? Can you send the full terminal output?
On 6/21/2019 6:16 PM, Francesca Pentimalli wrote:
External Email - Use Caution
Dear FreeSurfer experts,
I am trying to run mri_glmfit on a series
External Email - Use Caution
Dear FreeSurfer experts,
I am trying to run *mri_glmfit *on a series of concatenated volumes.
mri_glmfit --y $SUBJECTS_DIR/concat/new_glm_input.mgh --fsgd Qdec/qdec.fsgd
--mask fsaverage/label_volume/mask.mgz --glmdir glm_output --C
