Hi Adam,
Well that is good to hear! So you are all set with this problem then?
-Ani
On Thu, 6 Nov 2014, Adam Mezher wrote:
Hi Ani,
I actually did end up fixing the insula mis-segmentation using either control
points or WM edits for many subjects (I think the one I sent you too, not
sure)
Hi Ani,
I actually did end up fixing the insula mis-segmentation using either control
points or WM edits for many subjects (I think the one I sent you too, not
sure). However, I did notice that in some subjects, the edits will push the wm
line out a little too much such that minor part of the m
Hi Adam,
I know in your past email you mentioned that you do not think control
points could fix the situation, could you tell me why you think that? Have
you tried adding some and it failed?
I took a look at your data and the wm value seems pretty low (low 70-80s)
around the area near where
I uploaded one when I sent the first email, did you receive it? Uploaded to:
ftp.nmr.mgh.harvard.edu ; cd transfer/incoming
The file was titled ‘mezher_insula_fail.tar.gz’ which contains the entire FS
folder for one subject. Should I go ahead and resend it?
Thanks!_
Can you send us an image?
> On Oct 30, 2014, at 7:48 PM, Adam Mezher wrote:
>
>
> I believe it's in the surfaces. It is apparent when I load the lh.pial and
> lh.white over the brainmask.
>
> thanks,
> Adam
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I believe it's in the surfaces. It is apparent when I load the lh.pial and
lh.white over the brainmask.
thanks,
Adam
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The informati
Hi Adam
underestimated the insula in the aseg or in the surfaces?
cheers
Bruce
On Wed, 29 Oct
2014, Adam Mezher wrote:
Hi Bruce,
Sorry for not clarifying. A number of subjects in our set have underestimated
insula (usually anatomical right insula but sometimes both). I just uploaded an
ex
Hi Bruce,
Sorry for not clarifying. A number of subjects in our set have underestimated
insula (usually anatomical right insula but sometimes both). I just uploaded an
example to the ftp.
I don’t think control points or wm edits can help with some of these so I
wanted to see how we could go a
Hi Adam
sorry, I've lost the context for this. Why are you adding voxels to the
aparc+aseg in the insula?
cheers
Bruce
On Wed, 29 Oct 2014, Adam Mezher wrote:
> Hi Bruce and FS group,
> Thanks again for the speedy replies and help with everything. Quick question
> about editing voxels (specific
Hi Bruce and FS group,
Thanks again for the speedy replies and help with everything. Quick
question about editing voxels (specifically those in the lh/rh insula).
Should I simply add specific voxels to the aparc+aseg for this step? It was
a little unclear on the wiki.
Also, is there a specific co
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