Hi Adam,
I know in your past email you mentioned that you do not think control
points could fix the situation, could you tell me why you think that? Have
you tried adding some and it failed?
I took a look at your data and the wm value seems pretty low (low 70-80s)
around the area near where the surfaces cut off the insula. I would
suggest putting a in a few control points and running the subject again.
If this does not work, let us know and I can look into some other options.
But if you can fix it in the surfaces first, it will push the gm line out
and that area will get included in the aparc label later on. Right now it
probably isn't being labeled because it isn't considered part of the
cortex.
-Ani
On Thu, 30 Oct 2014, Adam Mezher wrote:
I uploaded one when I sent the first email, did you receive it? Uploaded to:
ftp.nmr.mgh.harvard.edu ; cd transfer/incoming
The file was titled ‘mezher_insula_fail.tar.gz’ which contains the entire FS
folder for one subject. Should I go ahead and resend it?
Thanks!
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