Re: [Freesurfer] basic high res data question

2014-04-10 Thread Bruce Fischl
Hi Remi I believe I upped that limit by an order of magnitude, which hopefully would be enough? If so, Zeke can get you a new version cheers Bruce On Thu, 10 Apr 2014, Remi Gau wrote: > When running this : > recon-all -maskbfs -segmentation -fill -tessellate -s $SUBJECT_HighRes > > mentionned

Re: [Freesurfer] basic high res data question

2014-04-10 Thread Bruce Fischl
Hi Sam have you tried running the post-hoc surface deformation on the 0.7mm data? Jon Polimeni (ccd) has experience with this and might be able to help you out (or Matt Glasser for that matter) cheers Bruce On Wed, 9 Apr 2014, Torrisi, Sam (NIH/NIMH) [F] wrote: Good afternoon gurus- I’m

Re: [Freesurfer] basic high res data question

2014-04-10 Thread Remi Gau
When running this : recon-all -maskbfs -segmentation -fill -tessellate -s $SUBJECT_HighRes mentionned on this page: http://surfer.nmr.mgh.harvard.edu/fswiki/HiResRecon I get these : mri_tessellate: max vertices 100 exceeded recon-all -s Subject_12 exited with ERRORS at Thu Apr 10 11:16:42 BS

Re: [Freesurfer] basic high res data question

2014-04-09 Thread Remi Gau
Hello all, I have a related question as I am also a freesurfer beginner and starting to use it on submilliter MP2RAGE 7T images. After having had a quick look at the videos, tutos and the archives, I found this: http://surfer.nmr.mgh.harvard.edu/fswiki/HiResRecon BTW on that page I guess tha

[Freesurfer] basic high res data question

2014-04-09 Thread Torrisi, Sam (NIH/NIMH) [F]
Good afternoon gurus- I’m new to FS and working with 0.7mm iso 7T MPRAGEs. After bias-correction with AFNI’s 3dUnifize, recon-all ran without hitch but downsampled everything to 1mm. Now I have basically the same sentiment and question as this thread from ~2 years ago (i’m linking to the middle