( $#srchemi == 0 ) then
if ( 0 == 0 ) then
echo "ERROR: no source hemi specified"
echo ERROR: no source hemi specified
ERROR: no source hemi specified
exit 1 ;
exit 1
Cheers, Clara
- Ursprüngliche Mail -
Von: "Douglas N Greve"
An: freesurfer@nmr.mgh.harvard.edu
Gesendet: Do
ne at the end? I've attached that for
> you.
> Cheers, Clara
>
> - Ursprüngliche Mail -
> Von: "Douglas N Greve"
> An: freesurfer@nmr.mgh.harvard.edu
> Gesendet: Donnerstag, 13. August 2015 18:12:40
> Betreff: Re: [Freesurfer] cannot find qdec file
&g
do you mean the one without the blank line at the end? I've attached that for
you.
Cheers, Clara
- Ursprüngliche Mail -
Von: "Douglas N Greve"
An: freesurfer@nmr.mgh.harvard.edu
Gesendet: Donnerstag, 13. August 2015 18:12:40
Betreff: Re: [Freesurfer] cannot find qdec fil
urfer@nmr.mgh.harvard.edu
> Gesendet: Dienstag, 4. August 2015 20:43:47
> Betreff: Re: [Freesurfer] cannot find qdec file
>
> oops, sorry for the delay, thanks for the reminder. The problem is that
> you have a blank line at the end of your long.qdec.table.dat file.
> Remove the li
no worries!
sadly, though, deleting the empty line wasn't the answer to the problem :(
Cheers, Clara
- Ursprüngliche Mail -
Von: "Douglas N Greve"
An: freesurfer@nmr.mgh.harvard.edu
Gesendet: Dienstag, 4. August 2015 20:43:47
Betreff: Re: [Freesurfer] cannot find qdec fi
ut why FreeSurfer can't find
> my qdec file?
>
> Cheers and thanks for working on this!
> Clara
>
> - Ursprüngliche Mail -
> Von: "Douglas Greve"
> An: freesurfer@nmr.mgh.harvard.edu
> Gesendet: Montag, 3. August 2015 17:16:18
> Betreff: Re:
:18
Betreff: Re: [Freesurfer] cannot find qdec file
can you run
mris_preproc --debug --qdec-long /scr/etsch2/kids/ct/qdec/long.qdec.table.dat
--target 7kids_template_sc1 --hemi lh --meas thickness --out
/scr/etsch2/kids/ct/qdec/lh.thickness.mgh |& tee fordoug.log
and send me fordoug.log ?
I ran it but it seems to have encountered the same error... The fordoug.log
file is attached.
Cheers, Clara
- Ursprüngliche Mail -
Von: "Douglas Greve"
An: freesurfer@nmr.mgh.harvard.edu
Gesendet: Montag, 3. August 2015 17:16:18
Betreff: Re: [Freesurfer] cannot find qdec fil
qdec file is attached.
Cheers, Clara
- Ursprüngliche Mail -
Von: "Douglas Greve"
An: freesurfer@nmr.mgh.harvard.edu
Gesendet: Montag, 3. August 2015 16:35:24
Betreff: Re: [Freesurfer] cannot find qdec file
Can you send your command line, full terminal output, and your
long.qdec.
the actual qdec file is attached.
Cheers, Clara
- Ursprüngliche Mail -
Von: "Douglas Greve"
An: freesurfer@nmr.mgh.harvard.edu
Gesendet: Montag, 3. August 2015 16:35:24
Betreff: Re: [Freesurfer] cannot find qdec file
Can you send your command line, full terminal output
path for the mris_preproc command I get
> nsubjects = 22
> ERROR: cannot find /scr/etsch2/kids/ct/.long.
>
>
>
> - Ursprüngliche Mail -
> Von: "Douglas Greve"
> An: freesurfer@nmr.mgh.harvard.edu
> Gesendet: Montag, 3. August 2015 16:23:48
> Betreff: Re: [Fr
Greve"
An: freesurfer@nmr.mgh.harvard.edu
Gesendet: Montag, 3. August 2015 16:23:48
Betreff: Re: [Freesurfer] cannot find qdec file
that is probably not the full path. Try typing
ls scr/etsch2/kids/ct/qdec/long.qdec.table.dat
If it says it cannot find the file, then it is not the full path.
then I get the error ERROR: cannot find
scr/etsch2/kids/ct/qdec/long.qdec.table.dat
I had tried that. Sorry, no luck with that.
- Ursprüngliche Mail -
Von: "Douglas Greve"
An: freesurfer@nmr.mgh.harvard.edu
Gesendet: Montag, 3. August 2015 16:16:58
Betreff: Re: [Freesurfer] c
ERROR: cannot find
> scr/etsch2/kids/ct/qdec/long.qdec.table.dat
>
> I had tried that. Sorry, no luck with that.
>
> - Ursprüngliche Mail -
> Von: "Douglas Greve"
> An: freesurfer@nmr.mgh.harvard.edu
> Gesendet: Montag, 3. August 2015 16:16:58
> Betre
you have to give it the entire path to the file
On 8/3/15 10:14 AM, Clara Kühn wrote:
> Dear FS-experts,
>
> I want to analyze my longitudinal data with your suggested LME models and am
> therefore following the walkthrough by J. Bernal. I get an error though very
> early on when using the comma
Dear FS-experts,
I want to analyze my longitudinal data with your suggested LME models and am
therefore following the walkthrough by J. Bernal. I get an error though very
early on when using the command
mris_preproc --qdec-long qdec/long.qdec.table.dat --target 7kids_template_sc1
--hemi lh --m
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