Re: [Freesurfer] check Talairach registration using Freeview

2015-08-21 Thread Douglas Greve
Koene, can you give the full command line and the full terminal output? I can't remember what was in your previous email (and I've deleted it:) doug On 8/21/15 5:20 PM, Koene Van Dijk wrote: > actually the error in the command line window is: > "Not reading in xfm fileinfo" > > > > > > > > > ___

Re: [Freesurfer] check Talairach registration using Freeview

2015-08-21 Thread Koene Van Dijk
actually the error in the command line window is: "Not reading in xfm fileinfo" ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended on

Re: [Freesurfer] check Talairach registration using Freeview

2015-08-21 Thread Koene Van Dijk
Thanks for your reply Doug. The flag "-v" that you suggested is indeed required, but I found out that it's not: freeview -v subj1/mri/T1.mgz -v subj1/mri/brainmask.mgz:reg=subj1/mri/transforms/talairach.xfm But that this seemed to work: freeview -v subj1/mri/T1.mgz -v subj1/mri/brainmask.

Re: [Freesurfer] check Talairach registration using Freeview

2015-08-21 Thread Douglas Greve
try freeview -v subj1/mri/T1.mgz -v subj1/mri/brainmask.mgz:reg=subj1/mri/transforms/talairach.xfm On 8/17/15 5:49 PM, Koene Van Dijk wrote: Hi there, I have two questions regarding Talairach registration. _*Question 1:*_ I would like to check Talairach registration according to this page

[Freesurfer] check Talairach registration using Freeview

2015-08-17 Thread Koene Van Dijk
Hi there, I have two questions regarding Talairach registration. _*Question 1:*_ I would like to check Talairach registration according to this page: https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach_freeview I see this line for the tutorial: freeview -v tal_before/mri/T1.mgz tal