Hi Anna
The DK atlas (or DKT?) gets written into the aparc+aseg.mgz volume, but the DKT
parts of it only consist of cortex. The subcortical labels are the normal ones
(caudate, putamen, etc...)
Cheers
Bruce
From: Arkhipova Anna, MUDr.
Sent: Monday, January 29, 2024 10:21 AM
To: Fischl, Bruce
Maybe you can give us more details about what you are trying to do? Generate an
fMRI time-series that is the average response in each cortical parcel? And
subcortical structure? The subcortical segmentation is not Talairach, although
I'm not sure that is relevant. Generating the average time
Hi Anna
Parcellation is more than just format conversion - you need to map it onto the
details of an individual subject's anatomy. In addition, the DKT atlas is only
cortical. If you want subcortical regions in addition you should run recon-all
as it will produce both.
Cheers
Bruce
From:
