Re: [Freesurfer] converting surfaces into volumes or integrating them into volumes

2015-10-19 Thread Douglas Greve
In that case, you just need to mri_convert aparc+aseg.mgz aparc+aseg.nii On 10/19/15 3:24 PM, Bruce Fischl wrote: > Hi Boris > > the aparc*aseg.mgz files are probably want you want. They are the surface > parcellations sampled into the volume. Of course you lose resolution when > you sample a con

Re: [Freesurfer] converting surfaces into volumes or integrating them into volumes

2015-10-19 Thread Bruce Fischl
Hi Boris the aparc*aseg.mgz files are probably want you want. They are the surface parcellations sampled into the volume. Of course you lose resolution when you sample a continuous surface into a discrete volume though. cheers Bruce On Mon, 19 Oct 2015, Boris Shabash wrote: > Hello FreeSurfe

Re: [Freesurfer] converting surfaces into volumes or integrating them into volumes

2015-10-19 Thread Douglas Greve
Try mri_surf2vol. Run it with --help to get more docs On 10/19/15 3:09 PM, Boris Shabash wrote: > Hello FreeSurfer group > > How are you? > > I have currently started working with FS and would like to visualize some of > the volume results. I have no issue visualizing the .mgz volumes produced >

[Freesurfer] converting surfaces into volumes or integrating them into volumes

2015-10-19 Thread Boris Shabash
Hello FreeSurfer group How are you? I have currently started working with FS and would like to visualize some of the volume results. I have no issue visualizing the .mgz volumes produced since I can use mri_convert to convert them to .nii format and then visualize them using my software. Howev