Hi Boris the aparc*aseg.mgz files are probably want you want. They are the surface parcellations sampled into the volume. Of course you lose resolution when you sample a continuous surface into a discrete volume though.
cheers Bruce On Mon, 19 Oct 2015, Boris Shabash wrote: > Hello FreeSurfer group > > How are you? > > I have currently started working with FS and would like to visualize some of > the volume results. I have no issue visualizing the .mgz volumes produced > since I can use mri_convert to convert them to .nii format and then visualize > them using my software. However, I'd like to know if there is a way to > convert the resulting surface labels (e.g. my_output/surf/rh.white or > my_output/surf/rh.pial) into .nii files that I can also visualize or combine > them with a resulting .mgz file into a single .nii file that contains the > information for both volumes and the surfaces. Ideally I'd like to know if > there is a way to combine them into a single file via the terminal. > > Please let me know if FS comes with a tool the allows for this process or if > you know of any external tool. > > > Sincerely, > Boris > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.