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Hi Bruce,
thank you for your quick answer. I managed it now to create cannot files based
on the atlas volumetric segmentations.
I first created:
mri_vol2surf —src .../Hammers_mith_atlas_n30r83_SPM5.nii --out
.../Hammers_AVG.nii --out_type mgh
Hi Boris
vol2surf samples a scalar overlay in the volume to be a scalar overlay on
the surface. This is NOT the same as a surface itself - it contains no
geometry or topology information. Try giving freeview a surface (which I
guess you have for subject 0021). Something like
freeview -f \
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Hi,
I used the following commands:
mri_vol2surf —src .../Hammers_mith_atlas_n30r83_SPM5.nii --out
lhHammers_mith_atlas_n30r83_SPM5surf.mgh --out_type mgh --hemi lh --regheader
0021
srcvol = .../Hammers_mith_atlas_n30r83_SPM5.nii
srcreg
Those are the commands. Can you send the command lines you used and a fuller
description of exactly how it is not working?
On 1/25/19 10:56 AM, Boris Rauchmann wrote:
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Dear FreeSurfer Developers,
I´m trying to extract the cortical thickness of individuals
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<>Dear FreeSurfer Developers,
I´m trying to extract the cortical thickness of individuals from a study cohort
based on an hammersmith n30r83 atlas segmentation. I have this atlas only in as
a volumetric file. I already run recon-all on all
