Those are the commands. Can you send the command lines you used and a fuller 
description of exactly how it is not working?

On 1/25/19 10:56 AM, Boris Rauchmann wrote:

        External Email - Use Caution
Dear FreeSurfer Developers,

I´m trying to extract the cortical thickness of individuals from a study cohort 
based on an hammersmith n30r83 atlas segmentation. I have this atlas only in as 
a volumetric file. I already run recon-all on all subjects. I tried 
mri_vol2surf and then mris_seg2annot but without success so far. What commands 
would you recommend me to run?

Thanks,
Boris



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