[Freesurfer] cvs_register then mri_vol2vol

2013-08-06 Thread Barron, Daniel S
Hi Freesurfers (Lilla), I'm running v5.1.0 on a Mac trying to apply a cvs morph via the following function: mri_vol2vol --targ cvs_avg35_inMNI152 --m3z $SUBJECTS_DIR/NC001/cvs_avg35_inMNI152/combined_tocvs_avg35_inMNI152_elreg_afteraseg-norm.m3z --noDefM3zPath --mov

Re: [Freesurfer] cvs_register then mri_vol2vol

2013-08-06 Thread Lilla Zollei
Hi Daniel, You need to specify the full path to the target volume, the subject id is not sufficient. It should be somthing like this: $FREESURFER_HOME/subjects/cvs_avg35_inMNI152/mri/norm.mgz Lilla On Tue, 6 Aug 2013, Barron, Daniel S wrote: Hi Freesurfers (Lilla), I'm running v5.1.0 on