Re: [Freesurfer] fsaverage_sym LR-flipchecks

2016-11-20 Thread Douglas Greve
___ > From: freesurfer-boun...@nmr.mgh.harvard.edu > on behalf of Douglas N Greve > > Sent: 18 November 2016 17:40 > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] fsaverage_sym LR-flipchecks > > Sorry, what are you trying to do? What did you do before you ran

Re: [Freesurfer] fsaverage_sym LR-flipchecks

2016-11-20 Thread James Roe
du Subject: Re: [Freesurfer] fsaverage_sym LR-flipchecks Sorry, what are you trying to do? What did you do before you ran isxconcat? What was your isxconcat command line? On 11/18/2016 11:34 AM, James Roe wrote: > Thanks for your reply, Doug. Registering both LH and RH to fsaverage_sym > wo

Re: [Freesurfer] fsaverage_sym LR-flipchecks

2016-11-18 Thread Douglas N Greve
gt; >>> I was wondering if you know why this is? >>> >>> (Resampling each onto the other surface I think shows that it is not a >>> bias introduced during recon-all of subj1_flipped because the output >>> is still more symmetrical when performed on in

Re: [Freesurfer] fsaverage_sym LR-flipchecks

2016-11-18 Thread James Roe
gt; bias introduced during recon-all of subj1_flipped because the output >> is still more symmetrical when performed on individual surface and >> resampled onto fsaverage_sym) >> >> >> thanks! >> >> >> James >> >> >>

Re: [Freesurfer] fsaverage_sym LR-flipchecks

2016-11-01 Thread Douglas N Greve
etrical when performed on individual surface and > resampled onto fsaverage_sym) > > > thanks! > > > James > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu > on behalf of Douglas Greve > > *Sent:* 28 October 2016 18:20 > *To:* freesurfe

Re: [Freesurfer] fsaverage_sym LR-flipchecks

2016-10-31 Thread James Roe
From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas Greve Sent: 28 October 2016 18:20 To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] fsaverage_sym LR-flipchecks Hi James, this looks like a fairly complicated analysis, and I'm not sure I understand it all. Are the ove

Re: [Freesurfer] fsaverage_sym LR-flipchecks

2016-10-28 Thread Douglas Greve
Hi James, this looks like a fairly complicated analysis, and I'm not sure I understand it all. Are the overlays fMRI or thickness results? How did you generate, for example, the top left images? On 10/26/16 3:15 AM, James Roe wrote: ​ Hi Freesurfer experts I have an ultimate goal of perfor