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Dear FS experts,
In my dataset I have 4 subjects where the T1 was acquired, planning the FOV
very close to the occipital lobe. I guess that triggers the error:
getSignalBehindHead ERROR (no slices behind head) WARNING: only 0 < 7
slices behind head! ER
Can you send the log file?
On 6/4/2020 9:12 AM, Boris Rauchmann wrote:
External Email - Use Caution
Dear FS experts,
In my dataset I have 4 subjects where the T1 was acquired, planning
the FOV very close to the occipital lobe. I guess that triggers the
error: getSignalBehindHead ERR
External Email - Use Caution
Please find the logfile attached.
Thank you
Am Do., 4. Juni 2020 um 15:18 Uhr schrieb Douglas N. Greve <
dgr...@mgh.harvard.edu>:
> Can you send the log file?
>
> On 6/4/2020 9:12 AM, Boris Rauchmann wrote:
>
> External Email - Use Caution
>
Hmmm, not sure what is going on here. I'm guessing that the back of the
head was cut off (or wrapped around). Is that right? I'm not sure why
this would create an error. If you upload one of your subjects, I'll
take a look. See instructions below
From the linux command line,
Create the file yo
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thanks, the subj I sent you the logfile has a cut on the posterior part, I
uploaded a similar case 098_S_4275_20181221.tar.gz
Is there any way to run gtmseg regardless?
Thanks
Am Fr., 5. Juni 2020 um 20:01 Uhr schrieb Douglas N. Greve <
dgr...@mgh.har
Get a new version of mri_seghead from here
https://gate.nmr.mgh.harvard.edu/safelinks/greve/mri_seghead
and copy it into $FREESURFER_HOME/bin
let me know if it works
On 6/5/2020 5:09 PM, Boris Rauchmann wrote:
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thanks, the subj I sent you the logfile has a c
