Re: [Freesurfer] image flip after use of mri_vol2surf/mri_surf2vol

2012-12-06 Thread Douglas N Greve
Hi Hubert, The physical side of the image in fslview is not indicative of the actual side. You have to look at the little letters on the side to see what side it is actually on. When you do this, do you see an R or an L? BTW, you might want to use mris_volsmooth which was written to do this kin

[Freesurfer] image flip after use of mri_vol2surf/mri_surf2vol

2012-12-05 Thread Fonteijn, H.M.J. (H.)
Hello, I'm relatively new to Freesurfer so chances are that this is a pretty basic error on my side but here goes anyhow. I'm trying to use mri_vol2surf for surface-based smoothing of functional MRI data. I would then like to extract time courses from the surface with spm functions by convertin