should be something like
mri_label2label --srclabel input.label --trglabel ouput.label --outmask
label.mask.nii.gz --regmethod surface --hemi lh --srcsubject subject
--trgsubject subject
On 1/30/2020 10:07 PM, Alexopoulos, Dimitrios wrote:
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Having diffic
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Having difficulty with how to use label2label for this purpose. Just need a
binary mask of medial wall (vertex number and 0 or 1s) on native surface.
What's would this command be?
On Jan 28, 2020 5:42 PM, "Greve, Douglas N.,Ph.D."
wrote:
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Yes, a label or roi metric file of 0 and 1s (preferably 0s for the medial wall
vertices) for that can be converted to workbench format.
Jim
On Jan 28, 2020 5:42 PM, "Greve, Douglas N.,Ph.D."
wrote:
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Do you mean you want a binary mask of the medial wall?
You can create a mask of the cortical label (?h.cortex.label) with
mri_label2label
You can then invert that with something like
fscalc lh.cortex.mask.mgz not -o lh.medialwall.mask.mgz
On 1/28/2020 6:31 PM, Alexopoulos, Dimitrios wrote:
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Is there a freesurfer file that contains metric info that delineates the medial
wall in the native surface output for an individual?
It appears to be associated with the ?lh.aparc.annot file (below).
I'd like to be able to export the medial wall metric
