Re: [Freesurfer] modify intensity normalization pipeline

2024-01-12 Thread Douglas N. Greve
You can put control points in the temporal lobe. https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/ControlPoints_freeview/ On 1/5/2024 4:24 PM, Carlos Alcocer wrote: External Email - Use Caution Hello, Is there a way to modify intensity normalization pipeline in recon-all script?

[Freesurfer] modify intensity normalization pipeline

2024-01-05 Thread Carlos Alcocer
External Email - Use Caution Hello, Is there a way to modify intensity normalization pipeline in recon-all script? The temporal lobe is being very poorly segmented because white matter is being segmented as gray matter and therefore gray matter does not reach outer boundary of pia