You can put control points in the temporal lobe. https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/ControlPoints_freeview/

On 1/5/2024 4:24 PM, Carlos Alcocer wrote:

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Hello,

Is there a way to modify intensity normalization pipeline in recon-all script? The temporal lobe is being very poorly segmented because white matter is being segmented as gray matter and therefore gray matter does not reach outer boundary of pial surface.

Thank you,

Carlos




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