Re: [Freesurfer] mri_ca_normalize using -seg flag

2013-07-18 Thread Bruce Fischl
I think 2, but it ignores the GCA if you give it a segmentation. cheers Bruce On Thu, 18 Jul 2013, Mark Plantz wrote: Hello freesurfers,     I am currently trying to create a normalized .mgz file using the mri_ca_normalize command. Instead of using a .gca atlas, I am using a manually segmente

[Freesurfer] mri_ca_normalize using -seg flag

2013-07-18 Thread Mark Plantz
Hello freesurfers, I am currently trying to create a normalized .mgz file using the mri_ca_normalize command. Instead of using a .gca atlas, I am using a manually segmented image. I have tried using the -seg flag. However, I keep getting an error that I am not inputting the correct argumen