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Hi Dr. Greve,
Thank you very much for your solution. That solved the problem.
I genuinely appreciate your support!
Best,
Hyunwoo Jeong
2022년 3월 10일 (목) 오전 2:52, Douglas N. Greve 님이 작성:
> The problem is that your design matrix is badly scaled. The
The problem is that your design matrix is badly scaled. The eTIV values
are much larger than the group membership (value=1). Try subtracting the
mean of the eTIV and dividing by the stddev to normalize it.
On 2/25/2022 8:07 PM, 정현우 wrote:
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Hi Dr. Greve,
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Hi Dr. Greve,
Thank you for your response. I uploaded the .mgh, .fsgd, and .mtx files
that I used to run the mri_glmfit command. I can upload the recon-all
outputs of the individual samples as well, if needed. The files are
uploaded in google drive,
Can you upload the data to me somewhere? I'd need the input volume and
the fsgd and any contrasts
On 2/21/2022 10:24 PM, 정현우 wrote:
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Hi Dr. Greve,
Thank you for your suggestion. Unfortunately, the same problem
occurred when I ran the command with
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Hi Dr. Greve,
Thank you for your suggestion. Unfortunately, the same problem occurred
when I ran the command with --no-pcc. Folders and files with the same names
were created. and the following error message (identical to the previous
one) appeared.
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Hi Dr. Greve,
Thank you for your suggestion. Unfortunately, the same problem occurred
when I ran the command with --no-pcc. Folders and files with the same names
were created. and the following error message (identical to the previous
one) appeared.
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Hi Dr. Greve,
Thank you for your suggestion. Unfortunately, the same problem occurred
when I ran the command with --no-pcc. Folders and files with the same names
were created. and the following error message (identical to the previous
one) appeared.
It looks like it is failing when computing the partial correlation coef.
Try running it with --no-pcc
On 2/16/2022 10:53 AM, 정현우 wrote:
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Hi Dr. Greve,
Yes, it seems like the output folder and some output files were created.
After running the mri_glmfit,
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Hi Dr. Greve,
Yes, it seems like the output folder and some output files were created.
After running the mri_glmfit, 'three_group_comparison.area.lh.glmdir'
folder was created. In the glmdir folder, 'three_group_comparison.area'
folder was created,
Did it create the output folder and some output files? I noticed that
there is a "error: No such file or directory" error
On 2/14/2022 8:46 PM, 정현우 wrote:
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Hi Dr. Greve,
Thank you for your reply. I attached the fsgd file, mtx file and the
Xg.dat
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Hi Dr. Greve,
Thank you for your reply. I attached the fsgd file, mtx file and the Xg.dat
file below.
Hyunwoo Jeong
2022년 2월 15일 (화) 오전 1:21, Douglas N. Greve 님이 작성:
> can you send your fsgd file and the Xg.dat file?
>
> On 2/14/2022 1:21 AM, 정현우
can you send your fsgd file and the Xg.dat file?
On 2/14/2022 1:21 AM, 정현우 wrote:
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Hello FreeSurfer Developers,
I'm attempting to compare cortical surface area among three groups
while controlling for estimated total intracranial volume (eTIV), as
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Hello FreeSurfer Developers,
I'm attempting to compare cortical surface area among three groups while
controlling for estimated total intracranial volume (eTIV), as described on
the Surface Based Group Analysis tutorial (
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