Re: [Freesurfer] mri_surfcluster to obtain ROI (label) centroid MNI coordinates

2017-03-13 Thread Douglas N Greve
It turns out that setting --min to 0 causes a problem. Try setting it to something close to 0, eg 1e-6 On 03/09/2017 03:10 AM, Ladan Shahshahani wrote: > Hi, > > Following previous discussions on the mailing list, I am using > mri_surfcluster to extract MNI (or Talairach) coordinates of a label

[Freesurfer] mri_surfcluster to obtain ROI (label) centroid MNI coordinates

2017-03-09 Thread Ladan Shahshahani
Hi, Following previous discussions on the mailing list, I am using mri_surfcluster to extract MNI (or Talairach) coordinates of a label using: mri_surfcluster --in $SUBJECTS_DIR/fsaverage/surf/lh.area --clabel lh.G_cingulate-Isthmus.label --sum ~/Desktop/pract3 --centroid --thmin 0 --hemi lh --su