It turns out that setting --min to 0 causes a problem. Try setting it to something close to 0, eg 1e-6
On 03/09/2017 03:10 AM, Ladan Shahshahani wrote: > Hi, > > Following previous discussions on the mailing list, I am using > mri_surfcluster to extract MNI (or Talairach) coordinates of a label > using: > > mri_surfcluster --in $SUBJECTS_DIR/fsaverage/surf/lh.area --clabel > lh.G_cingulate-Isthmus.label --sum ~/Desktop/pract3 --centroid --thmin > 0 --hemi lh --subject fsaverage --nofixmni > I tried different labels, but for all of them I get the following > coordinates (for left hemisphere): > -29.4 -22.0 17.4 > > I see that others are having the same problem, like the one in the > following link: > https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2015-November/042446.html > > Am I missing something here? > What can I do to solve this problem? > > Bests, > Ladan > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
