Re: [Freesurfer] mri_vol2surf warning

2018-05-02 Thread Douglas N. Greve
And what is the voxel resolution of the input to mri_vol2surf? On 05/02/2018 03:35 PM, Rachel Bencic wrote: > > > Hello, > > The voxel resolution of the unwarped mov volume used in bbregister was: > > voxel sizes: 3.75, 3.75, 5.00 > > So the reported values in the warning appear corre

Re: [Freesurfer] mri_vol2surf warning

2018-05-02 Thread Douglas N. Greve
When you ran bbregister, what was the voxel resolution of the mov volume? On 05/02/2018 01:28 PM, Rachel Bencic wrote: > > > Hello FreeSurfer Developers, > > I'm attempting to resample beta weights generated from AFNI’s > 3dDeconvolve command to individual subjects’ cortical surfaces. Prior > t

[Freesurfer] mri_vol2surf warning

2018-05-02 Thread Rachel Bencic
External Email - Use Caution Hello FreeSurfer Developers, I'm attempting to resample beta weights generated from AFNI’s 3dDeconvolve command to individual subjects’ cortical surfaces. Prior to running 3dDeconvolve, I ran bbregister to coregister subjects’ (unwarped) functional d

Re: [Freesurfer] mri_vol2surf warning seems serious

2004-11-18 Thread Doug Greve
It's probably the case that the surface did not intersect your volume, which probably means that the registration is wrong. Did you visually inspect the registration with tkregister2? doug Joongnam Yang wrote: > > Hi, > > I would appreciate any comment on the following warning when I ran > m

[Freesurfer] mri_vol2surf warning seems serious

2004-11-18 Thread Joongnam Yang
Hi, I would appreciate any comment on the following warning when I ran mri_vol2surf. At the end there is a warning, which might be serious. I ran lh and rh separately, and no warning message was issued for lh and the following warning was only issued for rh. . . . Done Mapping Source Volum