Re: [Freesurfer] mri_vol2vol memory error

2014-05-22 Thread Douglas N Greve
Hi Ben, please post questions to the list and not to us personally. Thanks! I do not have an alternative. I think you are using Thomas Yeo's stream which we are not supporting. He just uses binaries from FS. doug On 05/22/2014 12:16 PM, Ben Mooneyham wrote: Hi Douglas, Thank you for your

Re: [Freesurfer] mri_vol2vol memory error

2014-05-22 Thread Louis Nicholas Vinke
Hi Ben, There should be a procsurffast flag called -volproj_lowmem which avoids this mri_vol2vol memory issue. -Louis On Wed, 21 May 2014, Douglas N Greve wrote: mri_vol2vol when used in this way does not manage memory very well. It resamples the time series into a 256^3 volume of floats.

[Freesurfer] mri_vol2vol memory error

2014-05-21 Thread Ben Mooneyham
Hello all, I am doing pre-processing for resting-state fMRI volumes, but I have encountered an error and am unsure of how to correct it: I have previously determined the nonlinear warping transformations from my subjects' anatomical (T1) space to the 2mm MNI template using ANTs. At the end of my

Re: [Freesurfer] mri_vol2vol memory error

2014-05-21 Thread Douglas N Greve
mri_vol2vol when used in this way does not manage memory very well. It resamples the time series into a 256^3 volume of floats. Even for a small number of time points, this becomes unmanagebly huge On 05/21/2014 06:06 PM, Ben Mooneyham wrote: Hello all, I am doing pre-processing for