Re: [Freesurfer] Mris_anatomical_stats problem

2011-05-24 Thread Douglas N Greve
Jurgen, Both of these files were created with identical command lines. doug Jürgen Hänggi wrote: Hi Doug Attached are the two files generated from the same subject by using mris_anatomical_stats, once without smoothing (rh.aparc.a2005s.stats) and once with smoothing

[Freesurfer] Mris_anatomical_stats problem

2011-05-18 Thread Jürgen Hänggi
Dear FS experts I tried to read out in each subject the surface area values of some clusters derived from a group comparison. For that purpose, I used mri_surf2surf and mris_anatomical_stats. Everything worked fine, but in some clusters the direction of the effects reversed. A first guess was

Re: [Freesurfer] Mris_anatomical_stats problem

2011-05-18 Thread Douglas N Greve
Juegen, can you send the full terminal output? Also, you can try explicitly smoothing the file with mri_surf2surf and then run anatomical stats on the smoothed file. doug Jürgen Hänggi wrote: Dear FS experts I tried to read out in each subject the surface area values of some clusters

Re: [Freesurfer] mris_anatomical_stats problem

2006-06-02 Thread Bruce Fischl
hmm, I'm not sure you can specify -a and -l. Not sure what it would mean. Try taking the -a out. Does that file exist? On Fri, 2 Jun 2006, adam walczak wrote: Hello, I am trying to run mris_anatomical_stats using a label that I have created in tksurfer, but I get a strange error when I