Juegen, can you send the full terminal output? Also, you can try explicitly smoothing the file with mri_surf2surf and then run anatomical stats on the smoothed file. doug
Jürgen Hänggi wrote: > Dear FS experts > > I tried to read out in each subject the surface area values of some clusters > derived from a group comparison. > For that purpose, I used mri_surf2surf and mris_anatomical_stats. > > Everything worked fine, but in some clusters the direction of the effects > reversed. A first guess was that this might have to do with the smoothing > that we applied to the group comparison. > > Therefore, I smoothed the individual area files to get the smoothed surface > area in each subject using the following command: > > mris_anatomical_stats -a area_p01.annot -t rh.area -nsmooth 15 -f > $s/stats/rh.aparc.a2005s.stats $s rh > > But the surface area of this smoothed data gives the same values as the > unsmoothed data. > > Any idea what is wrong here? > > Thanks in advance > Regards > Jürgen > > PS: sorry for posting this message twice, but the first post did not > appeared in the archives > > ---------------------------------------------------------------------------- > Jürgen Hänggi, Ph.D. > Division Neuropsychology > Institute of Psychology > University of Zurich > Binzmuehlestrasse 14, PO Box 25 > 8050 Zurich, Switzerland > 0041 44 635 73 97 (phone office) > 0041 76 445 86 84 (phone mobile) > 0041 44 635 74 09 (fax office) > BIN 4.D.04 (office room number) > j.haenggi[at]psychologie.uzh.ch (email) > http://www.psychologie.uzh.ch/neuropsy/ (website) > http://www.juergenhaenggi.ch (private website) > > This e-mail (and any attachment/s) contains confidential and/or privileged > information. If you are not the intended recipient (or have received this > e-mail in error) please notify the sender immediately and destroy this > e-mail. Any unauthorised copying, disclosure or distribution of the > material in this e-mail is strictly forbidden. > ---------------------------------------------------------------------------- > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
