If you want to use the FA map, it's dmri/dtifit_FA.nii.gz
From: Knut J Bjuland [knutjor...@outlook.com]
Sent: Wednesday, November 30, 2016 4:40 PM
To: Yendiki, Anastasia
Cc: Freesurfer support list
Subject: Re: [Freesurfer] obtain fa FA data from the white matter
Hi Anastasia
If I want to use Tracula DTI files instead, which file do I choose: Is it
FA_ditifit.nii?
Best
Knut Jørgen
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The
Hi Knut Jørgen - The aparc+aseg doesn't contain the wm-* labels, only the
cortical labels from the aparc (in the 1000's and 2000's) and subcortical
labels from the aseg. The wm labels (in the 3000's and 4000's) are in the
wmparc only.
a.y
From:
Hi,
I would like to to obtain FA data from the white matter ROIs in
WMParcStatsLUT.txt. or FreeSurferColorLUT.txt. So would it work to coregister a
DWI file, either produced by dt_recon (or perhaps better - from Tracula) and
an anatomy file in atlas space and then use WMParcStatsLUT.txt or
