Re: [Freesurfer] patch error

2016-06-23 Thread Bruce Fischl
no problem. The stride error is something buried in the depths of openGL. It seems to be OS/version specific and there isn't much we can do about it Glad you figure out your error though Bruce On Thu, 23 Jun 2016, S.V.Shepherd [work] wrote: The error on flattening was caused by my saving t

Re: [Freesurfer] patch error

2016-06-23 Thread Z K
Thanks for the update. This information could be of potential help if this error is ever come across again by other users. -Zeke On 06/23/2016 01:53 PM, S.V.Shepherd [work] wrote: > The error on flattening was caused by my saving the surface, instead of > the patch, to lh.full.patch.3d. I apolo

Re: [Freesurfer] patch error

2016-06-23 Thread S.V.Shepherd [work]
The error on flattening was caused by my saving the surface, instead of the patch, to lh.full.patch.3d. I apologize -- it was a dumb mistake. I am unsure what caused the """ Assertion `a[j].inputstride == vptr->stride' failed. """ error, but it only occurred on a few attempts, so I was able to wo

Re: [Freesurfer] patch error

2016-06-23 Thread Bruce Fischl
hmmm, are you sure that the partition isn't full or something? On Thu, 23 Jun 2016, S.V.Shepherd [work] wrote: $ tksurfer ${subj} lh inflated -sulc 1) closed cut line around corpus callossum etc. 2) four tension relief cuts 3) select connected region 4) save as patch stephen v. shepher

Re: [Freesurfer] patch error

2016-06-23 Thread S.V.Shepherd [work]
I should also note that I have had a couple problems, trying to fill the uncut area, where I get the following error: --- tksurfer.bin: ../../src/mesa/tnl/t_vertex.c:423: update_input_ptrs: Assertion `a[j].inputstride == vptr->stride' failed. Abort (core dumped) --- *stephen v. shepherd phd*

Re: [Freesurfer] patch error

2016-06-23 Thread S.V.Shepherd [work]
$ tksurfer ${subj} lh inflated -sulc 1) closed cut line around corpus callossum etc. 2) four tension relief cuts 3) select connected region 4) save as patch *stephen v. shepherd phd* The Rockefeller University / 1230 York Avenue / New York NY 10065-6307 USA // 212.327.7699 On Thu, Jun 23

Re: [Freesurfer] patch error

2016-06-23 Thread Bruce Fischl
Hi Stephen how did you create the patch? It looks like it is corrupted since that vertex # is way too big. The total # of vertices in the patch is also wrong. cheers Bruce On Thu, 23 Jun 2016, S.V.Shepherd [work] wrote: Hello all, I'm trying to make a patch and have run into the 'bad vert

[Freesurfer] patch error

2016-06-22 Thread S.V.Shepherd [work]
Hello all, I'm trying to make a patch and have run into the 'bad vertex' error. It's come up a few times on the listserv, but I never saw a public resolution. One possible source of errors is that I had to do a manual correction in FreeView, including a 'remove intersections' in FreeView. However,