$ tksurfer ${subj} lh inflated -sulc
1) closed cut line around corpus callossum etc.
2) four tension relief cuts
3) select connected region
4) save as patch
*stephen v. shepherd phd*
The Rockefeller University / 1230 York Avenue / New York NY 10065-6307 USA
// 212.327.7699
On Thu, Jun 23, 2016 at 9:58 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
> Hi Stephen
>
> how did you create the patch? It looks like it is corrupted since that
> vertex # is way too big. The total # of vertices in the patch is also wrong.
>
> cheers
> Bruce
> On Thu, 23 Jun 2016, S.V.Shepherd [work] wrote:
>
> Hello all,
>>
>> I'm trying to make a patch and have run into the 'bad vertex' error. It's
>> come up a few times on the listserv, but I never saw a public resolution.
>> One possible source of errors is that I had to do a manual correction in
>> FreeView, including a 'remove intersections' in FreeView. However,
>> tksurfer
>> had no trouble mapping the curvature to the finished surface, so I assume
>> this was not likely to be the source of the error. Details below:
>>
>> $ mris_flatten -w 0 -distances 20 7 lh.cort.patch.3d lh.cort.patch.flat
>> using write iterations = 0
>> sampling 7 neighbors out to a distance of 20 mm
>> reading patch lh.cort.patch.3d with 1919246708 vertices (2846533.5% of
>> total)
>> MRISreadPatch: bad vertex # (1701060705) found in patch file
>> No such file or directory
>>
>> stephen
>>
>> stephen v. shepherd phd
>> The Rockefeller University / 1230 York Avenue / New York NY 10065-6307 USA
>> // 212.327.7699
>>
>>
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