You should check that anatomical analysis and make sure that it is
correct. Once that is done, make sure that the subjectname in the
subjectname file is correct, then preproc-sess should run.
doug
Michelle Umali wrote:
> Hi Doug,
>
> I've run recon-all -all. I ended up inputing an .mgz file co
Hi Doug,
I've run recon-all -all. I ended up inputing an .mgz file converted
from a .nii file that was converted from a .dicom. Was needed info
lost somewhere along the way?
Anyway, I thought I ran recon-all -all LD08 (wasn't LD08-anat, does
one need -anat?)successfully, because it genera
Hi Michelle,
the SUBJECTS_DIR is an environment variable that you have to set prior
to running the anatomical analysis (disregarding the functional analysis
for a moment). Before running the functional analysis, you must run
recon-all on the anatomical data, eg
recon-all -all -subject LD08-a
Hi Doug,
Does the $SUBJECTS_DIR folder have to be where the FreeSurfer program
is? I had done this:
setenv SUBJECTS_DIR /home/fsl/structural
So this SUBJECTS_DIR is not located where FreeSurfer is.
Is the following the exact correct path:
FreeSurfer/$SUBJECTS_DIR/LD08/subjectname
where LD08 is
